Where academic tradition
meets the exciting future

Ion Petre

TUCS GP Supervisor at Åbo Akademi University, Department of Information Technologies

TUCS Research Unit: Computational Biomodeling Laboratory (Combio Lab)

e-mail: ion.petre@abo.fi

Current homepage: http://users.abo.fi/ipetre/

Current TUCS GP Students:

Samuel Rönnqvist (Åbo Akademi University, Department of Information Technologies)


Sepinoud Azimi (Åbo Akademi University, Department of Information Technologies)

Diana-Elena Gratie (Åbo Akademi University, Department of Information Technologies)

Bogdan Iancu (Åbo Akademi University, Department of Information Technologies)

Chang Li (Åbo Akademi University, Department of Information Technologies)

Andrzej Mizera (Åbo Akademi University, Department of Information Technologies)

Vladimir Rogojin (Åbo Akademi University, Department of Information Technologies)

Latest publications:

Click here to see the full list of publications from the TUCS Publication Database

Krishna Kanhaiya, Vladimir Rogojin, Keivan Kazemi, Eugen Czeizler, Ion Petre, NetContrl4BioMed: A pipeline for biomedical data acquisition and analysis of network controllability. BMC Bioinformatics 19(7), 3–12, 2018.

Sergiu Ivanov, Vladimir Rogojin, Sepinoud Azimi, Ion Petre, WEBRSIM: A Web-Based Reaction Systems Simulator. TUCS Technical Reports 1195, TUCS, 2018.

Gheorghe Paun, Ion Petre, Grzegorz Rozenberg, Arto Salomaa (Eds.), At the Intersection of Computer Science with Biology, Chemistry and Physics – In Memory of Solomon Marcus. Theoretical Computer Science 701, 2017.

Jarkko Kari, Florin Manea, Ion Petre (Eds.), Unveiling Dynamics and Complexity, Lecture Notes in Computer Science 10307, Springer, 2017.

Mikhail Barash, Ion Petre, A Foundational Framework for Step-by-Step Model Construction. Fundamenta Informaticae 154, 1–10, 2017.

Sepinoud Azimi, Charmi Panchal, Andrzej Mizera, Ion Petre, Multi-Stability, Limit Cycles, and Period-Doubling Bifurcation with Reaction Systems. International Journal of Foundations of Computer Science 28(8), 1007–1020, 2017.

Krishna Kanhaiya, Eugen Czeizler, Cristian Gratie, Ion Petre, Controlling Directed Protein Interaction Networks in Cancer. Scientific Reports 7(1), 10327, 2017.

Cecilia Sahlgren, Annika Meinander, Hongbo Zhang, Fang Cheng, Maren Preis, Chunlin Xu, Tiina Salminen, Diana Toivola, Daniel Abankwa, Didem Karaman, Outi Salo, Ronald Österbacka, John Eriksson, Stefan Willför, Ion Petre, Jouko Peltonen, Reko Leino, Mark Johnson, Jessica Rosenholm, Niklas Sandler, Tailored Approaches in Drug Development and Diagnostics – From Molecular Design to Biological Model Systems. Advanced Healthcare Materials , 1700258, 2017.

Usman Sanwal, Luigia Petre, Ion Petre, Stepwise Construction of a Metabolic Network in Event-B: The Heat Shock Response. Computers in Biology and Medicine (91), 1–12, 2017.

Andrzej Ehrenfeucht, Ion Petre, Grzegorz Rozenberg, Reaction systems: a model of computation inspired by the functioning of the living cell. In: Stavros Konstantinidis, Nelma Moreira, Rogério Reis, Jeffrey Shallit (Eds.), The Role of Theory in Computer Science, 1–32, World Scientific, 2017.

Sepinoud Azimi, Joonas Jalonen, Jarkko Kari, Ion Petre (Eds.), Computability in Europe 2017, TUCS General Publication, 2017.

Sepinoud Azimi, Hendrik Jan Hoogeboom, Jetty Kleijn, Marloes van der Nat, Ion Petre, Arto Salomaa (Eds.), A Magician in Science: Liber Amicorum Grzegorz Rozenberg, TUCS General Publication, TUCS, 2017.

Dwitiya Tiyagi-Tiwari, Krishna Kanhaiya, Ion Petre, Controllability and Identifying Drug Targets of Metabolic Networks in Cancer. TUCS Technical Reports 1185, 2017.

Bogdan Iancu, Usman Sanwal, Cristian Gratie, Ion Petre, Fit-Preserving Refinement of the ErbB Signalling Pathway. TUCS Technical Reports 1187, TUCS, 2017.